Minnesota payroll tax and registration guide

  • Updated

Why is this important?

The following information requests and registration instructions must be completed before you can use OnPay to run payroll. To maintain compliance with state payroll tax regulations, you will need to provide: 

  • Your state Employer Identification Number and state tax IDs - You must be registered with all state and local agencies listed in this article
  • Tax rates - State and local tax offices determine these rates based on the type, age, and size of your business
  • TPA and power of attorney - Most tax offices require this before we can submit quarterly wage reports and deposits on your behalf

This information must be provided and maintained by you in order for OnPay to accurately file and deposit tax payments for your company. OnPay is not responsible for any penalties or interest that incur due to missing or incorrect company tax information.

Note: Each state has its own requirements, so if you pay employees in more than one state, you’ll find separate tax guides for each state

 

Let Middesk handle your state tax registrations (and more)

If you'd like help registering your business with state agencies, our partner Middesk makes it simple and easy to hire employees and stay compliant in every state.

  • Register with every state agency to get the tax IDs you need within minutes
  • Stay compliant as you grow by managing agency mail and notices in your dashboard
  • Manage all your government accounts in one place using Middesk's intuitive platform
  • Foreign Qualify with the Secretary of State to create payroll tax accounts 

Learn more about Middesk→

 


 

What information OnPay needs from you

Use this checklist to make sure you’ve covered everything required to set up your account as a Minnesota employer so OnPay can accurately file and pay taxes on your behalf: 

To do:

What is this?

 

Make sure your business is registered with the Minnesota Department of Revenue

Allows your business to file and pay taxes in Minnesota

More info >

 

Make sure your business is registered with Unemployment Insurance Minnesota

Allows your business to pay required unemployment insurance in Minnesota

More info >

 

Provide OnPay with your Minnesota Tax ID and deposit frequency

The employer identification number is issued by the Minnesota Department of Revenue

More info >

 

Provide OnPay with your Minnesota Unemployment/PFML ID

An 8-digit number unique to your account with Unemployment Insurance Minnesota

More info >

 

Provide OnPay with your Minnesota Unemployment (SUI) Rate

A tax rate you receive annually from Unemployment Insurance Minnesota

More info >

 

Provide OnPay with your Minnesota Workforce Enhancement Fee Rate

A required fee that supports state employment and training programs for workers who have permanently lost their jobs

More info >

What state and local taxes and filings OnPay handles for Minnesota employers

OnPay handles the filing of all state and local taxes for businesses in Minnesota, including:

Type of Tax

Form ID

Form Name

Frequency

Withholding

Form MW-5

Withholding Tax Deposit/Payment

Semi-Weekly, Monthly, Quarterly, Annual

Form MW-3

Minnesota Annual Wage Withholding Tax Reconciliation

Annual

State W-2

Wage and Tax Statement

Annual

Unemployment

MNDEED1

Employer's Unemployment Insurance

Quarterly

Other

New Hire Report

MN New Hire Report

As needed


 

Where you can find the tax account numbers needed

If you are an existing employer who has previously run payroll in Minnesota, you likely already have the IDs and online accounts needed for OnPay to process your tax filings. 

If you are a new employer in Minnesota, you will need to register your business with the Minnesota Department of Revenue and Unemployment Insurance Minnesota. This must be completed for OnPay to be able to file and pay your Minnesota taxes.

Withholding Tax Account Number and Deposit Frequency

Existing Minnesota Employer: 

  • You can find your Withholding Tax Account Number and Deposit Frequency on notices received from the Minnesota Department of Revenue. If you cannot locate this account number, please call their office at (651)-282-9999.

New Minnesota Employer: Register with the Minnesota Department of Revenue 

  • Register with the Minnesota Department of Revenue online. (Click “Begin the Registration Process” and submit the required information.)
  • You’ll receive your ID number instantly after completing this registration.

Unemployment Account Number and Tax Rate

Updated January 1, 2025

Existing Minnesota Employer: 

  • You can find your Unemployment Insurance Account Number and Tax Rate on the annual Determination of Tax Rate Notice received from Unemployment Insurance Minnesota. 
  • If you’re unable to locate these numbers, contact the agency at (651) 296-6141
  • SUI Rates range from 0.4% to 9.3%, including a base tax rate of 0.4%. The unemployment wage base is $43,000.

New Minnesota Employer: Register with the Unemployment Insurance Minnesota

  • Register with Unemployment Insurance Minnesota online
  • You'll receive your account number and tax rate instantly once you have completed the online registration.
  • New employer rates vary by industry. You can learn more on the agency’s website.
  • New employer rates generally range from 1.4% to 9.3%, including a 0.4% base tax rate, and with a wage base of $43,000.

Minnesota Workforce Enhancement Fee Rate

All Minnesota Employers: 

  • The Workforce Enhancement Fee Rate for Minnesota is currently a fixed rate of 0.1%.
  • This fee supports employment and training programs for workers who have permanently lost their jobs.

Paying employees in other states?

If you operate in multiple states or just have employees working from home across a state line, it's important to file the correct state forms for those workers. See what forms we file in the states where you pay employees.

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